MK4MDD

SNP Report

Basic Information
Name rs821616 dbSNP Ensembl
Location Chrchr1:232144598(Forward)
Variant Alleles A/T
Ancestral Allele A
Annotation 3_prime_UTR_variant; missense_variant
PolyPhen: possibly damaging(ENST00000366637, ENST00000422590, ENST00000427560, ENST00000439617)
unknown(ENST00000535983)
SIFT: deleterious(ENST00000366637, ENST00000422590, ENST00000427560)
tolerated(ENST00000439617)
Consequence to Transcript 3_prime_UTR_variant(ENST00000537876)
missense_variant(ENST00000366637, ENST00000422590, ENST00000427560, ENST00000439617, ENST00000535983)
No. of Studies (Positive/Negative) 1 (1/0) Help

Positive relationship between rs821616 and MDD (count: 1)
Reference Research Type Statistical Result Relation Description Help
Bosker, 2010 patients and normal controls Significance of candidate SNPs for MDD identified from the l...... Significance of candidate SNPs for MDD identified from the literature within the GAIN MDD GWAS More...

Relationships between rs821616 and other components at different levels (count: 0) Help
Positive relationship network of rs821616 in MK4MDD
Network loading ...

Note:
1. The different color of the nodes denotes the level of the nodes.
Genetic/Epigenetic Locus Protein and Other Molecule Cell and Molecular Pathway Neural System Cognition and Behavior Symptoms and Signs Environment MDD
Genetic/Epigenetic Locus Protein and Other Molecule Cell and Molecular Pathway Neural System Cognition and Behavior Symptoms and Signs Environment MDD
2. User can drag the nodes to rearrange the layout of the network. Click the node will enter the report page of the node. Right-click will show also the menus to link to the report page of the node and remove the node and related edges. Hover the node will show the level of the node and hover the edge will show the evidence/description of the edge.
3. The network is generated using Cytoscape Web Cytoscape Web
Negative relationships between rs821616 and MDD (count: 0)
Negative relationships between rs821616 and other components at different levels (count: 0) Help
rs821616 related genes (count: 1)