SNP Report

Name	rs6311 dbSNP Ensembl
Location	Chrchr13:47471478(Forward)
Variant Alleles	C/T
Ancestral Allele	C
Annotation	upstream_gene_variant
Consequence to Transcript	upstream_gene_variant(ENST00000378688, ENST00000542664, ENST00000543956)
No. of Studies (Positive/Negative)	2 (1/1)

Reference	Research Type	Statistical Result	Relation Description
Bosker, 2010	patients and normal controls		Significance of candidate SNPs for MDD identified from the l...... Significance of candidate SNPs for MDD identified from the literature within the GAIN MDD GWAS More...

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Note:
1. The different color of the nodes denotes the level of the nodes.

Genetic/Epigenetic Locus	Protein and Other Molecule	Cell and Molecular Pathway	Neural System	Cognition and Behavior	Symptoms and Signs	Environment	MDD

2. User can drag the nodes to rearrange the layout of the network. Click the node will enter the report page of the node. Right-click will show also the menus to link to the report page of the node and remove the node and related edges. Hover the node will show the level of the node and hover the edge will show the evidence/description of the edge.
3. The network is generated using Cytoscape Web

Reference	Research Type	Statistical Result	Relation Description
Tencomnao T, 2010	Patients and nomal controls	chi(2) = 1.32; d.f. = 2; P = 0.516	We found no significant differences between the two groups ...... We found no significant differences between the two groups with regard to both genotype distributions (chi(2) = 1.32, d.f. = 2, P = 0.516) and allele frequencies (chi(2) = 0.01, d.f. = 1, P = 0.913, odds ratio = 0.96, 95% confidence interval = 0.67-1.39). More...

Approved Symbol	Approved Name	Type	No. of Studies (Positive/Negative)
HTR2A	5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled	Literature-origin; SNP mapped; Protein mapped	9(7/2)