SNP Report

Name	rs563556 dbSNP Ensembl
Location	Chrchr5:112153996(Forward)
Variant Alleles	C/G
Ancestral Allele	G
Annotation	intron_variant; NMD_transcript_variant; upstream_gene_variant
Consequence to Transcript	intron_variant(ENST00000257430, ENST00000457016, ENST00000507379, ENST00000508376, ENST00000508624, ENST00000512211, LRG_130_t1, LRG_130_t2, LRG_130_t3) NMD_transcript_variant(ENST00000508624) upstream_gene_variant(ENST00000502371, ENST00000504915, ENST00000506342)
No. of Studies (Positive/Negative)	1 (1/0)

Reference	Research Type	Statistical Result	Relation Description
Yang Z, 2012	patients and normal controls		Two SNPs (rs2464805 and rs563556) within the APC gene exhibi...... Two SNPs (rs2464805 and rs563556) within the APC gene exhibited a statistically significant association with MDD when analyzed by genotype and allele frequencies More...

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Note:
1. The different color of the nodes denotes the level of the nodes.

Genetic/Epigenetic Locus	Protein and Other Molecule	Cell and Molecular Pathway	Neural System	Cognition and Behavior	Symptoms and Signs	Environment	MDD

2. User can drag the nodes to rearrange the layout of the network. Click the node will enter the report page of the node. Right-click will show also the menus to link to the report page of the node and remove the node and related edges. Hover the node will show the level of the node and hover the edge will show the evidence/description of the edge.
3. The network is generated using Cytoscape Web

Approved Symbol	Approved Name	Type	No. of Studies (Positive/Negative)
APC	adenomatous polyposis coli	Literature-origin; SNP mapped	1(1/0)