MK4MDD

SNP Report

Basic Information
Name rs28722151 dbSNP Ensembl
Location Chrchr11:27681176(Forward)
Variant Alleles C/G
Ancestral Allele C
Annotation 5_prime_UTR_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; NMD_transcript_variant; non_coding_exon_variant; upstream_gene_variant
Consequence to Transcript 5_prime_UTR_variant(ENST00000439476, ENST00000525528)
downstream_gene_variant(ENST00000532965)
intron_variant(ENST00000314915, ENST00000356660, ENST00000395978, ENST00000395980, ENST00000395981, ENST00000395983, ENST00000395986, ENST00000418212, ENST00000420794, ENST00000438929, ENST00000499008, ENST00000499568, ENST00000500662, ENST00000501176, ENST00000502161, ENST00000525950, ENST00000530686, ENST00000530786, ENST00000530861, ENST00000532997, ENST00000533131, ENST00000533246, ENST00000584049)
nc_transcript_variant(ENST00000499008, ENST00000499568, ENST00000500662, ENST00000501176, ENST00000502161, ENST00000530313, ENST00000530686, ENST00000584049)
NMD_transcript_variant(ENST00000530786)
non_coding_exon_variant(ENST00000530313)
upstream_gene_variant(ENST00000528035)
No. of Studies (Positive/Negative) 1 (1/0) Help

Positive relationship between rs28722151 and MDD (count: 1)
Reference Research Type Statistical Result Relation Description Help
Licinio, 2009 patients and normal controls Association analyses of patients with MDD and controls showe...... Association analyses of patients with MDD and controls showed that 6 SNPs were associated with MDD (rs12273539, rs11030103, rs6265, rs28722151, rs41282918, and rs11030101) More...

Relationships between rs28722151 and other components at different levels (count: 0) Help
Positive relationship network of rs28722151 in MK4MDD
Network loading ...

Note:
1. The different color of the nodes denotes the level of the nodes.
Genetic/Epigenetic Locus Protein and Other Molecule Cell and Molecular Pathway Neural System Cognition and Behavior Symptoms and Signs Environment MDD
Genetic/Epigenetic Locus Protein and Other Molecule Cell and Molecular Pathway Neural System Cognition and Behavior Symptoms and Signs Environment MDD
2. User can drag the nodes to rearrange the layout of the network. Click the node will enter the report page of the node. Right-click will show also the menus to link to the report page of the node and remove the node and related edges. Hover the node will show the level of the node and hover the edge will show the evidence/description of the edge.
3. The network is generated using Cytoscape Web Cytoscape Web
Negative relationships between rs28722151 and MDD (count: 0)
Negative relationships between rs28722151 and other components at different levels (count: 0) Help
rs28722151 related genes (count: 2)