MK4MDD

SNP Report

Basic Information
Name rs1539243 dbSNP Ensembl
Location Chrchr1:206474444(Forward)
Variant Alleles T/C
Ancestral Allele C
No. of Studies (Positive/Negative) 2 (1/1) Help

Positive relationship between rs1539243 and MDD (count: 1)
Reference Research Type Statistical Result Relation Description Help
Koido K, 2010 Patients and nomal controls Significant associations were detected for SNP rs1539243 in ...... Significant associations were detected for SNP rs1539243 in IKBKE (inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon) gene showing different allelic and genotypic distributions in the total as well as in separate diagnostic groups as compared to controls. More...

Relationships between rs1539243 and other components at different levels (count: 0) Help
Positive relationship network of rs1539243 in MK4MDD
Network loading ...

Note:
1. The different color of the nodes denotes the level of the nodes.
Genetic/Epigenetic Locus Protein and Other Molecule Cell and Molecular Pathway Neural System Cognition and Behavior Symptoms and Signs Environment MDD
Genetic/Epigenetic Locus Protein and Other Molecule Cell and Molecular Pathway Neural System Cognition and Behavior Symptoms and Signs Environment MDD
2. User can drag the nodes to rearrange the layout of the network. Click the node will enter the report page of the node. Right-click will show also the menus to link to the report page of the node and remove the node and related edges. Hover the node will show the level of the node and hover the edge will show the evidence/description of the edge.
3. The network is generated using Cytoscape Web Cytoscape Web
Negative relationships between rs1539243 and MDD (count: 1)
Reference Research Type Statistical Result Relation Description
Traks T, 2015 Patients and nomal controls P-value =0.403 Comparison of allele or haplotype frequencies between cases ...... Comparison of allele or haplotype frequencies between cases and controls was done by chi-squared test. The statistical significance threshold was set to 0.05 for all tests. Ten thousand permutations were used to correct P values for errors of multiple testing. More...

Negative relationships between rs1539243 and other components at different levels (count: 0) Help
rs1539243 related genes (count: 0)