MK4MDD

SNP Report

Basic Information
Name rs766288 dbSNP Ensembl
Location Chrchr1:231557942(Forward)
Variant Alleles G/T
Ancestral Allele G
Annotation regulatory_region_variant
Consequence to Transcript regulatory_region_variant(ENST00000602634, ENST00000602956, ENST00000602962, ENST00000602885, ENST00000602567, ENST00000366639, ENST00000413309, ENST00000602825, ENST00000475168)
No. of Studies (Positive/Negative) 2 (2/0) Help

Positive relationship between rs766288 and MDD (count: 2)
Reference Research Type Statistical Result Relation Description Help
Okuda, 2010 patients and normal controls We found an association between rs766288 in TSNAX and female...... We found an association between rs766288 in TSNAX and female MDD in the allele/genotype analysis. More...
Arias, 2014 Patients and nomal controls p(genotype)=0.03; p(allele)=0.011 Rs3738401 (DISC1), rs1615409 and rs766288 (TSNAX) showed gen...... Rs3738401 (DISC1), rs1615409 and rs766288 (TSNAX) showed genotypic and allelic evidence of association with the risk of MDD (Supplementary Table 2). Logistic regression models controlled for age confirmed the association of these polymorphisms with MDD (Table 1). In detail, rs3738401 AA genotype, rs1615409 AA genotype and rs766288 T allele were associated with lower MDD risk(p=0.004; p=0.0019; p=0.008, respectively). More...

Relationships between rs766288 and other components at different levels (count: 0) Help
Positive relationship network of rs766288 in MK4MDD
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Note:
1. The different color of the nodes denotes the level of the nodes.
Genetic/Epigenetic Locus Protein and Other Molecule Cell and Molecular Pathway Neural System Cognition and Behavior Symptoms and Signs Environment MDD
Genetic/Epigenetic Locus Protein and Other Molecule Cell and Molecular Pathway Neural System Cognition and Behavior Symptoms and Signs Environment MDD
2. User can drag the nodes to rearrange the layout of the network. Click the node will enter the report page of the node. Right-click will show also the menus to link to the report page of the node and remove the node and related edges. Hover the node will show the level of the node and hover the edge will show the evidence/description of the edge.
3. The network is generated using Cytoscape Web Cytoscape Web
Negative relationships between rs766288 and MDD (count: 0)
Negative relationships between rs766288 and other components at different levels (count: 0) Help
rs766288 related genes (count: 0)