SNP Report

Name	rs1513105 dbSNP Ensembl
Location	Chrchr12:71098168(Forward)
Variant Alleles	T/G
Ancestral Allele	T
Annotation	intron_variant; nc_transcript_variant; NMD_transcript_variant
Consequence to Transcript	intron_variant(ENST00000283228, ENST00000342084, ENST00000378778, ENST00000440835, ENST00000548220, ENST00000549308, ENST00000550661, ENST00000551219) nc_transcript_variant(ENST00000548220) NMD_transcript_variant(ENST00000551219)
No. of Studies (Positive/Negative)	1 (1/0)

Reference	Research Type	Statistical Result	Relation Description
Shi C, 2012	patients and normal controls	allelic: chi2=12.35, p=0.00044 ; genotypic:chi2=11.26, df=2, p=0.0036	Of the 16 SNPs selected, rs1513105 was the only one showing ...... Of the 16 SNPs selected, rs1513105 was the only one showing allelic association (chi2=9.019, p=0.0027) and genotypic association (chi2=8.813, df=2, p=0.012), of which the rs1513105(C) allele was associated with an increased risk of MDD (OR=1.331, 95% CI 1.104-1.604), but the rs1513105 association resulted mainly from female subjects (chi2=12.35, p=0.00044 for allelic association; chi2=11.26, df=2, p=0.0036 for genotypic association). More...

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Note:
1. The different color of the nodes denotes the level of the nodes.

Genetic/Epigenetic Locus	Protein and Other Molecule	Cell and Molecular Pathway	Neural System	Cognition and Behavior	Symptoms and Signs	Environment	MDD

2. User can drag the nodes to rearrange the layout of the network. Click the node will enter the report page of the node. Right-click will show also the menus to link to the report page of the node and remove the node and related edges. Hover the node will show the level of the node and hover the edge will show the evidence/description of the edge.
3. The network is generated using Cytoscape Web

Approved Symbol	Approved Name	Type	No. of Studies (Positive/Negative)
PTPRR	protein tyrosine phosphatase, receptor type, R	SNP mapped	0(0/0)