SNP Report

Name	rs1800629 dbSNP Ensembl
Location	Chrchr6:31543031(Forward)
Variant Alleles	G/A
Ancestral Allele	G
Annotation	downstream_gene_variant; upstream_gene_variant
Consequence to Transcript	downstream_gene_variant(ENST00000418386, ENST00000454783, ENST00000471842, ENST00000489638) upstream_gene_variant(ENST00000449264)
No. of Studies (Positive/Negative)	1 (1/0)

Reference	Research Type	Statistical Result	Relation Description
Bosker, 2010	patients and normal controls		Significance of candidate SNPs for MDD identified from the l...... Significance of candidate SNPs for MDD identified from the literature within the GAIN MDD GWAS More...

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Note:
1. The different color of the nodes denotes the level of the nodes.

Genetic/Epigenetic Locus	Protein and Other Molecule	Cell and Molecular Pathway	Neural System	Cognition and Behavior	Symptoms and Signs	Environment	MDD

2. User can drag the nodes to rearrange the layout of the network. Click the node will enter the report page of the node. Right-click will show also the menus to link to the report page of the node and remove the node and related edges. Hover the node will show the level of the node and hover the edge will show the evidence/description of the edge.
3. The network is generated using Cytoscape Web

Approved Symbol	Approved Name	Type	No. of Studies (Positive/Negative)
TNF	tumor necrosis factor	Literature-origin; SNP mapped; Protein mapped	5(5/0)
LTA	lymphotoxin alpha (TNF superfamily, member 1)	Literature-origin; SNP mapped	2(1/1)